Basic Information
VIS ID
TVIS44030928
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
p36.13
Reference genome
NCBI36/hg18
Start
19156301/18957220 (Hg38)
End
19156301/18957220 (Hg38)
Orient
+
Fragile sites / regions
FRA1A
Nearest miRNA
hsa-mir-12136/Upstream/60072; hsa-mir-101-1/Downstream/1676459;
Nearest TSS
ENST00000473358/Upstream/534; ENST00000437898/Downstream/120607;
Nearest CpG islands
chr1-CpG: 182/Target, None/Upstream, None/Downstream
Nearby gene
IFFO2(-548) ;
Upstream sequence
CCGCAATGCCCCTGGCCCCAAATTCCTTCGGATGTGCGCGACCGCGGCTGGAAGGGCTGGGGGACCACAGTATCCGAAGGTGCATCGGCACCCCACCCCC
Downstream sequence
ACTCTAGCCTGGGGAGGCCCAGATCGACCTTTCGGGGATAAGAGGGCGCCCGTGCCCCACGCTGCGGACCCGGGGGTGGGCTCCTCGAATGCTAGCTGCG
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate