Basic Information
VIS ID
TVIS44030929
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
p13.2
Reference genome
NCBI36/hg18
Start
115045794/114701650 (Hg38)
End
115045794/114701650 (Hg38)
Orient
-
Nearest miRNA
hsa-mir-101-1/Upstream/1819521; hsa-mir-1182/Downstream/1858374;
Nearest TSS
ENST00000473358/Upstream/6032; ENST00000468191/Downstream/15244;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/31286, chr1-CpG: 35/Downstream/78804
Nearby gene
RN7SL432P(-3726) ; NRAS(+2814) ;
Nearest cancer related gene
NRAS(OG, +2814) ;
Upstream sequence
tgaggcaagcagattgcttgagctcaggagttcgagaccagcaggggcaacatggcaaaaccccttctctacaaaaaatcagctaggcatggtggtgcac
Downstream sequence
ctgtagtcccagctaccaggaagctgaggtgggaggattgcttgagcctgggaggtggaggtttgcagtgagctgagatggagccactgcactccagccc
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate