Basic Information
VIS ID
TVIS44030930
Fusion event
HTLV-1-LOC101928565 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
q24.2
Reference genome
NCBI36/hg18
Start
166704498/168468636 (Hg38)
End
166704498/168468636 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC101928565
Nearest miRNA
hsa-mir-101-1/Upstream/93015; hsa-mir-1182/Downstream/1682742;
Nearest TSS
ENST00000473358/Upstream/45980; ENST00000367818/Downstream/27008;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/242035, chr1-CpG: 153/Downstream/636892
Upstream sequence
ATCACAGATCTTCTTTCAGACTGGACAGTGATCATGGCATCTTTCAGGCAGAAAGAGGAGGGTTAACTTGGCTGGGAGAGGAGATAAGGAAATGTCTAAC
Downstream sequence
CAGTCTTCTCACCACCAAaaaacaaaacaaaacaattcaaaacgaaacaaaacaaaaAAACTATTagcacctggcacagcacctgtcatatagtaataga
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate