Basic Information
VIS ID
TVIS44030954
Fusion event
HTLV-1-LINC01412 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr2
Cytoband
q22.3
Reference genome
NCBI36/hg18
Start
144995971/144521934 (Hg38)
End
144995971/144521934 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA2S ; FRA2K
Target gene
LINC01412
Nearest miRNA
hsa-mir-128-1/Upstream/3935249; hsa-mir-10b/Downstream/4808344;
Nearest TSS
ENST00000437798/Upstream/877; ENST00000413525/Downstream/2649;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/4123, chr2-CpG: 41/Downstream/2235
Upstream sequence
TAAAGCAAGACTTTGAATGCAAGAGTCACTGGCAATTGCACTCAAAGGAGGGACAAGCCACCACATGGGTTGCCACATCCACACTCCCAGAGGTATACGT
Downstream sequence
CTTTGTATTTTGTATTTTTTTTTGCGGGGCGGGGGAGTGGGGTGGGGGTGGTTAATAGCTACCTAGCACGACCACAGCTAGATCTTGTTCTAGGATGCAA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate