Basic Information
VIS ID
TVIS44030976
Fusion event
HTLV-1-NEK10 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr3
Cytoband
p24.1
Reference genome
NCBI36/hg18
Start
27252189/27235694 (Hg38)
End
27252189/27235694 (Hg38)
Orient
-
Location type
Intronic
Target gene
NEK10
Nearest miRNA
hsa-mir-12127/Upstream/1570755; hsa-let-7g/Downstream/3926010;
Nearest TSS
ENST00000440867/Upstream/19219; ENST00000607601/Downstream/49207;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/611021, chr3-CpG: 34/Downstream/133427
Upstream sequence
aagaagtcaaaaaataacagatgctgatgaggttgtggagaaaaagaaatgcttttacattgttgatgggagtgtaaattagttcaaccattgtggaaga
Downstream sequence
cagtgtggcaattcctcaaagacctaaagacagaaattccattcgacccagcaattccattactgggtatatacccaaaggaatagaaattgttctatta
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate