Basic Information
VIS ID
TVIS44030985
Fusion event
HTLV-1-LINC00693 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr3
Cytoband
p24.1
Reference genome
NCBI36/hg18
Start
28764839/28748344 (Hg38)
End
28764839/28748344 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC00693
Nearest miRNA
hsa-mir-12127/Upstream/3083405; hsa-let-7g/Downstream/2413360;
Nearest TSS
ENST00000440867/Upstream/171878; ENST00000636582/Downstream/87632;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/171865, chr3-CpG: 88/Downstream/1858151
Upstream sequence
CTTATGCAAGTTCCTCAAAGGAGTATGCCTCAAGTGGCATAGGGAAAAAGATCTGGGAGACCAGTTGAACCAGACAGAAAACGAGGAGCAACTTGGGGTA
Downstream sequence
CAAGGATTCAGATTGTGATGGCTGCCCTAAGTTAGGATTCCCTGTGATCCACTAGACATGTTTCAGCTGCAAACCATACTGGGAATAGTGGGTAGTTTAG
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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