Basic Information
VIS ID
TVIS44030987
Fusion event
HTLV-1-LINC00692 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr3
Cytoband
p24.2
Reference genome
NCBI36/hg18
Start
25882289/25865794 (Hg38)
End
25882289/25865794 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA3A
Target gene
LINC00692
Nearest miRNA
hsa-mir-12127/Upstream/200855; hsa-let-7g/Downstream/5295910;
Nearest TSS
ENST00000440867/Upstream/74773; ENST00000469437/Downstream/756896;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/75641, chr3-CpG: 71/Downstream/756819
Upstream sequence
ataggtaactatgtgcgatgatgaatatgttaatttgtttcattAATTTGCTTCattaacatattcatcatcacacatagttacctgtttttttcctgtg
Downstream sequence
tATCCCATAGCGTCATGttatatatcttaaatatattaatacaatttattttaaaaaataGTTACTGTCATATATATTACAAATACAGCTTCCAGTTTAA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate