Basic Information
VIS ID
TVIS44030989
Fusion event
HTLV-1-ZBBX integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr3
Cytoband
q26.1
Reference genome
NCBI36/hg18
Start
168555662/167355180 (Hg38)
End
168555662/167355180 (Hg38)
Orient
-
Location type
Intronic
Target gene
ZBBX
Nearest miRNA
hsa-let-7g/Upstream/3183624; hsa-mir-1224/Downstream/1196674;
Nearest TSS
ENST00000440867/Upstream/72608; ENST00000498413/Downstream/17808;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/3350673, chr3-CpG: 23/Downstream/24959
Upstream sequence
ATCTTGTTAATTTGATGAATGCCAGATCAGTTGTGCTAAGCTTCAGAATCCATTTGAGTTTAATTAAATTATTCACATTTGCCAAATTAATATATAAGAA
Downstream sequence
AAGTGGAACTTTTGGGCTTCGTCTTTGCCATCAATATATGTAAATGGATAGGTCATTTAAAAATTTGCCaacaacaaaacacactgtttattgtcttccg
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate