Basic Information
VIS ID
TVIS44030994
Fusion event
HTLV-1-ACOX3 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr4
Cytoband
p16.1
Reference genome
NCBI36/hg18
Start
8477891/8425264 (Hg38)
End
8477891/8425264 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA4A
Target gene
ACOX3
Nearest miRNA
hsa-mir-378d-1/Upstream/419883; hsa-mir-12113/Downstream/1130904;
Nearest TSS
ENST00000502981/Upstream/9409; ENST00000532937/Downstream/3197;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/38320, chr4-CpG: 40/Downstream/3112
Upstream sequence
tcttacactgccggggtgatcagaaaggaaaggaaagagaaatagaagggaaccgcgaagcagatactgaagccaaaagagccgcaaggtgggaccctcc
Downstream sequence
attagaaatgcttatagaaggacccctagtatggggtaatcccctgtaggaaaccaagccccagtactcaaaagaaataggatggggaacctcacgagga
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate