Basic Information
VIS ID
TVIS44031002
Fusion event
HTLV-1-ATP10D integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr4
Cytoband
p12
Reference genome
NCBI36/hg18
Start
47257581/47560807 (Hg38)
End
47257581/47560807 (Hg38)
Orient
+
Location type
Intronic
Target gene
ATP10D
miRNAs that regulate target gene
hsa-mir-192-5p ; hsa-mir-335-5p ; hsa-mir-493-3p ; hsa-mir-4452 ; hsa-mir-4780 ; hsa-mir-183-3p ; hsa-mir-6756-3p ; hsa-mir-3127-3p
Nearest miRNA
hsa-mir-12113/Upstream/7058688; hsa-mir-1243/Downstream/91862;
Nearest TSS
ENST00000502981/Upstream/548; ENST00000512393/Downstream/17505;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/97005, chr4-CpG: 18/Downstream/145619
Upstream sequence
CTAGAATTTCCAGAGATGCTGAGTTAAAGGGTCATCCATCATCAGTGTTGCACTAGTCTGACCACAGAGTTTGGGAAGCTAGTGTCCAGGTGGTGTGAGG
Downstream sequence
ATATGGATCTGACATGGCTGTGCCCAGAGGGAGGAATATGTAAAACAAGTTGATGGTTTGATATTTTGCCAGAGGTCAGTCCTGGTATTCCCACAAGATC
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate