Basic Information
VIS ID
TVIS44031005
Fusion event
HTLV-1-STPG2 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr4
Cytoband
q22.3
Reference genome
NCBI36/hg18
Start
98895254/97755080 (Hg38)
End
98895254/97755080 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA4E
Target gene
STPG2
Nearest miRNA
hsa-mir-12113/Upstream/10454497; hsa-mir-1243/Downstream/1242307;
Nearest TSS
ENST00000502981/Upstream/388154; ENST00000503667/Downstream/138123;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/2205237, chr4-CpG: 19/Downstream/388371
Upstream sequence
CTCTGGTGAATGGATGACTAAGGTTAACGAGGTCAAATAAAGCAAAAAAACAAAAACAGAAAATAAACTTAAATCAAGTTTTCTGCTTATCTTCAAACTT
Downstream sequence
CAACAAAATCCTTTTGTGGTAAGTTTGGAGGAGGGAAGAGCATACTTTCTCGCATTTATCGGCTTCATTTCTCTAATAAATAACTAATAAACAGGCATCT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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