Basic Information
VIS ID
TVIS44031012
Fusion event
HTLV-1-LOC101928306 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr4
Cytoband
p16.2
Reference genome
NCBI36/hg18
Start
4985239/4932611 (Hg38)
End
4985239/4932611 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC101928306
Nearest miRNA
hsa-mir-4800/Upstream/2682455; hsa-mir-12113/Downstream/990664;
Nearest TSS
ENST00000502981/Upstream/70183; ENST00000513705/Downstream/86826;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/60165, chr4-CpG: 27/Downstream/86665
Upstream sequence
AAAATAAAGACCAATTTTAGTTGAGGTGTCACTtctctttgtctctctgtctttctcgctctctctctctctttctctctctctACATACAATGTGTATA
Downstream sequence
AATAATATATAACATATTCTGTCACCATATTTATATGCTCACAAAAGTTTTTCAAGCTGTTTCTCCTTCCTTGAAGCTGTTTTGAATTTATGAGCAACTA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate