Basic Information
VIS ID
TVIS44031018
Fusion event
HTLV-1-ALPK1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr4
Cytoband
q25
Reference genome
NCBI36/hg18
Start
113569384/112428779 (Hg38)
End
113569384/112428779 (Hg38)
Orient
-
Location type
Intronic
Target gene
ALPK1
Nearest miRNA
hsa-mir-12113/Upstream/1568132; hsa-mir-1243/Downstream/219095;
Nearest TSS
ENST00000502981/Upstream/2273; ENST00000506057/Downstream/86606;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/16612, chr4-CpG: 55/Downstream/81890
Upstream sequence
gtccctcccccacaacagaaagtaagctccttgagggctcactgtctgctgtttcccctgtgtctagaacaggccctggaatgtggtggtactctatacg
Downstream sequence
tatttacagaattaataaatGAATTCTAATTGCTGTGAAATCATCAATTAAAGGGCTCTTTGCCAAGAGCGTGCAGAAATCAATTAATCTGGCTTCAAAA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate