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Viral Integration Site DataBase
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TVIS44031028
Basic Information
VIS ID
TVIS44031028
Fusion event
HTLV-1-FDCSP integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr4
Cytoband
q13.3
Reference genome
NCBI36/hg18
Start
71126404/70226098 (Hg38)
End
71126404/70226098 (Hg38)
Orient
+
Location type
Intronic
Target gene
FDCSP
Nearest miRNA
hsa-mir-12113/Upstream/3949170; hsa-mir-1243/Downstream/6347470;
Nearest TSS
ENST00000502981/Upstream/27;
ENST00000304954/Downstream/16490;
Nearest CpG islands
None/Target,
chr4-CpG: 46/Upstream/1875895
,
chr4-CpG: 55/Downstream/462039
Upstream sequence
CAATTTCAACATATTGAGATAGTTGATGAGTAATAACTGATCCTAGGGGAGAGGCCTTTAAGCCACAGATTTCTCCATTCCATTATACCTTTGAGTATAT
Downstream sequence
AAAACAGCTACAATATTCCAGGGCCAGTCACTTGCCATTTCTCATAACAGCGTCAGAGAGAAAGAACTGACTGAAACGTTTGAGGTAAGAAAGGTCTTAA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Sample Information
×
Sample name
Co9
Sample type
Nontumor
Age
61
Gender
Male
CpG Island Information
×
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