Basic Information
VIS ID
TVIS44031034
Fusion event
HTLV-1-LOC105377262 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr4
Cytoband
q13.2
Reference genome
NCBI36/hg18
Start
67494098/66945785 (Hg38)
End
67494098/66945785 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105377262
Nearest miRNA
hsa-mir-12113/Upstream/668857; hsa-mir-1243/Downstream/9627783;
Nearest TSS
ENST00000502981/Upstream/942504; ENST00000265404/Downstream/475269;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/1274829, chr4-CpG: 37/Downstream/599490
Upstream sequence
ATTAGAAAAGGAAAATGTAGTAATTAACATTCTATGTTTATACCTTTAATGGGACTATAAATGTGATATTGCTTTCCAGCTCCTGGCTTCATCCAAGTTG
Downstream sequence
GAACCCATTTACTATATATTTTTACTCAAGATATGTCATTTGATAGTctagaatatgtgctccctgaggtcaggaaagatatcttattcacctttgtatc
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate