Basic Information
VIS ID
TVIS44031056
Fusion event
HTLV-1-LINC02112 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr5
Cytoband
p15.31
Reference genome
NCBI36/hg18
Start
9861358/9808246 (Hg38)
End
9861358/9808246 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC02112
Nearest miRNA
hsa-mir-4277/Upstream/754351; hsa-mir-10397/Downstream/594118;
Nearest TSS
ENST00000502646/Upstream/95868; ENST00000508097/Downstream/46131;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/261643, chr5-CpG: 103/Downstream/441402
Upstream sequence
aaatctgcagagaacacatccaccttcttagagactacataagtgattgtgaacactgaatgttggtagaaatatgagccattctgatgaagtcacagat
Downstream sequence
gaaaacaaggaacatgttatcaggcaatgaagtaaaggtaatccctattatatagtggcaaagaacttgactaacgtgttcataaatgaagttagctatt
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate