Basic Information
VIS ID
TVIS44031059
Fusion event
HTLV-1-XRCC4 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr5
Cytoband
q14.2
Reference genome
NCBI36/hg18
Start
82555707/83224132 (Hg38)
End
82555707/83224132 (Hg38)
Orient
-
Location type
Intronic
Target gene
XRCC4
Nearest miRNA
hsa-mir-10397/Upstream/383908; hsa-mir-103a-1/Downstream/3890747;
Nearest TSS
ENST00000502646/Upstream/119224; ENST00000503923/Downstream/247333;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/146604, chr5-CpG: 61/Downstream/248436
Upstream sequence
ggttggttccaagtctttgcttattgtgaatagcgttttttaaaatccatttagccattcttttaactggagaatttagtctatttacattgtagattat
Downstream sequence
tattgataggtatggagttatttctgcaattttgtttattattttctagtgttttttttgtggataattcgttcccttcttcctttgtgctttgatagct
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate