Basic Information
VIS ID
TVIS44031063
Fusion event
HTLV-1-MEF2C-AS1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr5
Cytoband
q14.3
Reference genome
NCBI36/hg18
Start
88630469/89298896 (Hg38)
End
88630469/89298896 (Hg38)
Orient
-
Location type
Intronic
Target gene
MEF2C-AS1
Nearest miRNA
hsa-mir-10397/Upstream/631957; hsa-mir-103a-1/Downstream/717725;
Nearest TSS
ENST00000502646/Upstream/333021; ENST00000508742/Downstream/119911;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/409124, chr5-CpG: 17/Downstream/1110630
Upstream sequence
agatgaagctactgctagacatacagtgtgaatgcaggtaggaactggaaaataagctatggctttcttctcttcccatggtctcatctccctccaatgc
Downstream sequence
gtcccattggttgaccttgaccagacgccaactaacaagggagaccagttgatAAGTAGTAAAGGGGAGGAGATGGATTTGGGAAGACAAAAAAGAATAA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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