Basic Information
VIS ID
TVIS44031076
Fusion event
HTLV-1-FAXDC2 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr5
Cytoband
q33.2
Reference genome
NCBI36/hg18
Start
154200172/154840419 (Hg38)
End
154200172/154840419 (Hg38)
Orient
-
Location type
Intronic
Target gene
FAXDC2
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-21-5p
Nearest miRNA
hsa-mir-10397/Upstream/10879; hsa-mir-103a-1/Downstream/5633983;
Nearest TSS
ENST00000502646/Upstream/4097; ENST00000518782/Downstream/10171;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/82970, chr5-CpG: 124/Downstream/17029
Upstream sequence
cctggcttcaagcaatcctcttgcctcagccttccaaagtgttgaaattacacccatgaaccCttttttttaaattgattttttttaggagatggggtct
Downstream sequence
caccatggtgtccaagctggactcaaactcctgggctcaagggatcctcctgcctcagccttctgagtagctgggactacaggtgtacaccaccatgccc
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate