Basic Information
VIS ID
TVIS44031083
Fusion event
HTLV-1-PRIM2 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr6
Cytoband
p11.2
Reference genome
NCBI36/hg18
Start
57413241/57440484 (Hg38)
End
57413241/57440484 (Hg38)
Orient
+
Location type
Intronic
Target gene
PRIM2
miRNAs that regulate target gene
hsa-mir-665 ; hsa-mir-887-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-4266 ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-6894-5p ; hsa-mir-7160-5p ; hsa-mir-202-3p ; hsa-mir-98-5p ; hsa-mir-4500 ; hsa-mir-4458 ; hsa-let-7i-5p ; hsa-let-7g-5p ; hsa-let-7f-5p ; hsa-let-7e-5p ; hsa-let-7d-5p ; hsa-let-7c-5p ; hsa-let-7b-5p ; hsa-let-7a-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-4487 ; hsa-mir-558 ; hsa-mir-3160-3p ; hsa-mir-7162-3p ; hsa-mir-6500-3p ; hsa-mir-3614-5p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-4779 ; hsa-mir-4695-5p ; hsa-mir-890
Nearest miRNA
hsa-mir-10398/Upstream/50272; hsa-mir-10524/Downstream/13936476;
Nearest TSS
ENST00000381078/Upstream/60537; ENST00000421261/Downstream/53371;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/217971, chr6-CpG: 35/Downstream/413392
Upstream sequence
gctcaagcATACATCCACATTTTCAACCAAGAATCCTGTAAACAGTCTTGATTATTTGTTGAGAGCAAGAGAGACATATATTAAAAAGAATTAGAAGTTA
Downstream sequence
ATACCTGGTTTAGGATCATATTCCTCTCTAATTTCCTCTTTTGAGAAAGTAATTGTAGTTGTTTGTAGATAGCTGATTAACTTTGAAGCATATACATATA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate