Basic Information
VIS ID
TVIS44031090
Fusion event
HTLV-1-LOC105377862 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr6
Cytoband
q14.1
Reference genome
NCBI36/hg18
Start
77551218/76784782 (Hg38)
End
77551218/76784782 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105377862
Nearest miRNA
hsa-mir-10398/Upstream/1356309; hsa-mir-10524/Downstream/1754481;
Nearest TSS
ENST00000381078/Upstream/9799; ENST00000602452/Downstream/678991;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/1035232, chr6-CpG: 132/Downstream/677732
Upstream sequence
attgtccttgacttccctctttctctcatataccacatctaaatcatcctcaaagcctgtcaactgtaccttcaataaataccttaatgcagtcatttac
Downstream sequence
tgctatttcctgtggcctacattattgaatagtctcctaaatactttctctattttgatctatgaaagccacccctctgtctctaaatctaatctacata
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate