Basic Information
VIS ID
TVIS44031098
Fusion event
HTLV-1-PREP integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr6
Cytoband
q21
Reference genome
NCBI36/hg18
Start
105869527/105314959 (Hg38)
End
105869527/105314959 (Hg38)
Orient
+
Location type
Intronic
Target gene
PREP
miRNAs that regulate target gene
hsa-mir-1301-3p
Nearest miRNA
hsa-mir-10398/Upstream/6190263; hsa-mir-1202/Downstream/1469166;
Nearest TSS
ENST00000381078/Upstream/35943; ENST00000424894/Downstream/8809;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/134764, chr6-CpG: 74/Downstream/87647
Upstream sequence
taaggcaactacagccttacaaatgtagtcaaaattactccttcatccatgggctgcagaatggatattgtgttagcaggtataaacacaacattcatct
Downstream sequence
ctttgtacagctccatcagagctcttgggtgactaggtgcattgtcaatgagcagtaaatatttggaaaggaattgttctaagcagtaggtctcaacagt
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate