Basic Information
VIS ID
TVIS44031099
Fusion event
HTLV-1-LOC105374873 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr6
Cytoband
p25.3
Reference genome
NCBI36/hg18
Start
691605/746605 (Hg38)
End
691605/746605 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105374873
Nearest miRNA
hsa-mir-10398/Downstream/643709;
Nearest TSS
ENST00000381078/Upstream/35072; ENST00000607084/Downstream/15070;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/35308, chr6-CpG: 23/Downstream/141000
Upstream sequence
TAACTTTGCAGAATTTCTCCTATCCATGTTGTTTCTTCATCCTTATGTTATTATccctccaatccattcttctaaaattataagggtgatcgttctaaaa
Downstream sequence
cacaaagctgatcatattatacccttgtcaaaagtaccattgcctcttggattaaattcaaatttcacagcctgccagggacttgattacctgactcctg
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate