Basic Information
VIS ID
TVIS44031100
Fusion event
HTLV-1-ERMARD integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr6
Cytoband
q27
Reference genome
NCBI36/hg18
Start
169894776/169752755 (Hg38)
End
169894776/169752755 (Hg38)
Orient
+
Location type
Intronic
Target gene
ERMARD
Nearest miRNA
hsa-mir-10398/Upstream/2754843; hsa-mir-4644/Downstream/578006;
Nearest TSS
ENST00000381078/Upstream/958; ENST00000590017/Downstream/1150;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/720, chr6-CpG: 45/Downstream/37260
Upstream sequence
AGCTAATTATGACTGTCACAACACAGCCCCCCCTTAACTCAACACACCAAAATAAAGAGCTTCGGTTCCGCTTTAGATCCTGAATTTGACTTCTTTGCAG
Downstream sequence
GTTTATACGATGGTCTTAGTGTCATGTGGGGTAATTGTGAGGATTTCGATTGTATTTAATTCTCCATGGAAAACCAGTACGGTTTGCTACTTTTTACATG
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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