Basic Information
VIS ID
TVIS44031133
Fusion event
HTLV-1-LOC102724708 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr8
Cytoband
q13.2
Reference genome
NCBI36/hg18
Start
68466378/67391589 (Hg38)
End
68466378/67391589 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC102724708
Nearest miRNA
hsa-mir-124-1/Upstream/3012332; hsa-mir-10400/Downstream/7156954;
Nearest TSS
ENST00000518652/Upstream/47614; ENST00000526382/Downstream/38078;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/47774, chr8-CpG: 64/Downstream/560601
Upstream sequence
aggcaggtggatcaactgaggtcaggagttcaagaccagcctggccaacatggcaaaaccctatctctagtaaaaatactagttggacatggtgataggt
Downstream sequence
acctgtaatcccagctattcgggaggctgaggcaggggaatcgcttgaaccctggaggtggaggttgcagtgagccgagactgtgccattgtgatccagc
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate