VISDB Viral Integration Site DataBase

VIS ID

TVIS44031154

Fusion event

HTLV-1-PTPDC1 integration

Validated

No

Detection method

HTS

Data source

Curated

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2019

PubMed ID

Virus name

HTLV-1

Subtype

HTLV-1c

Reference genome

Chromosome

chr9

Cytoband

q22.32

Reference genome

Start

End

95882215/94080112 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-340-5p ; hsa-mir-21-5p ; hsa-mir-16-5p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106a-5p ; hsa-mir-142-5p ; hsa-mir-106b-5p ; hsa-mir-302a-3p ; hsa-mir-302b-3p ; hsa-mir-302c-3p ; hsa-mir-302d-3p ; hsa-mir-372-3p ; hsa-mir-373-3p ; hsa-mir-20b-5p ; hsa-mir-520e ; hsa-mir-520a-3p ; hsa-mir-526b-3p ; hsa-mir-520b ; hsa-mir-520c-3p ; hsa-mir-519d-3p ; hsa-mir-520d-3p ; hsa-mir-548n ; hsa-mir-302e ; hsa-mir-5590-3p ; hsa-mir-31-3p ; hsa-mir-4758-3p ; hsa-mir-539-5p ; hsa-mir-4698 ; hsa-mir-4712-3p ; hsa-mir-8063 ; hsa-mir-6769a-3p ; hsa-mir-3943 ; hsa-mir-4323 ; hsa-mir-4262 ; hsa-mir-181d-5p ; hsa-mir-181c-5p ; hsa-mir-181b-5p ; hsa-mir-181a-5p ; hsa-mir-562 ; hsa-mir-543 ; hsa-mir-4796-3p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-6509-5p ; hsa-mir-5706 ; hsa-mir-4782-5p ; hsa-mir-23c ; hsa-mir-23b-3p ; hsa-mir-23a-3p ; hsa-mir-130a-5p ; hsa-mir-6839-5p ; hsa-mir-378j ; hsa-mir-4766-5p ; hsa-mir-4756-3p ; hsa-mir-1298-3p ; hsa-mir-3126-3p ; hsa-mir-5580-3p ; hsa-mir-1304-5p ; hsa-mir-6765-5p ; hsa-mir-193a-5p ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-1827 ; hsa-mir-6514-5p ; hsa-mir-4802-5p

Nearest miRNA

hsa-mir-101-2/Upstream/260691; hsa-let-7a-1/Downstream/95845;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/48958, chr9-CpG: 150/Downstream/85726

Upstream sequence

CCAGGTTATTAGAACATTCCCAGGCATCAGAGCTTGGGTCAGGTTGGGAGGGCTCCATGTGGCAGGGTGACCCTACATGGAATATTGGAACATAGGCAGG

Downstream sequence

ATGAGGAGAGCATCTACCCAGGTGGGTGGCAGCAGCAGCTTGGCATAGGTGTTAAAGCCCAGATGGGATGAGAGAGGCATCCACATGGAGGAGGGAGCAG