Basic Information
VIS ID
TVIS44031157
Fusion event
HTLV-1-LOC105376196 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr9
Cytoband
q31.1
Reference genome
NCBI36/hg18
Start
106741098/104938996 (Hg38)
End
106741098/104938996 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105376196
Nearest miRNA
hsa-let-7a-1/Upstream/6709779; hsa-mir-12126/Downstream/1661932;
Nearest TSS
ENST00000422679/Upstream/10759; ENST00000607692/Downstream/52785;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/10479, chr9-CpG: 34/Downstream/29223
Upstream sequence
ggcctggtatatggtatgtgctcaataaatgatagttgtttattattGTCATTTattatcatcatcatcatcatcatAATTAAATATTATTCCAAGCAAC
Downstream sequence
AATGTGTTCCTCATAGTCCAACAATAATTTAATAAATGTAACCTTTCCAAAACTCCGATCTGCaaattttaaataaatattttcaattaaattaatCAGT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate