Basic Information
VIS ID
TVIS44031171
Fusion event
HTLV-1-RSU1P2 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr10
Cytoband
q11.21
Reference genome
NCBI36/hg18
Start
44934068/45118614 (Hg38)
End
44934068/45118614 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA10G
Target gene
RSU1P2
Nearest miRNA
hsa-mir-1265/Upstream/2120933; hsa-mir-107/Downstream/45400;
Nearest TSS
ENST00000439456/Upstream/117726; ENST00000483623/Downstream/62813;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/117276, chr10-CpG: 64/Downstream/79929
Upstream sequence
TGCTTAAGACTCCATTCAAGCTAGATGAGAAAAAAAATTACACAGCTAATATTCTCCCTAATATACAGAATTTTTTAAACCCCCAGTCATAGTGAAAATC
Downstream sequence
TAAAGAAATTAACATGCAGACCCATCTGGATGGGATGGTATTCACTCTTTGAACCAATACTTAGAGAATGCTGATTAGGTGCACAGCACCATACTTTTTA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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