Basic Information
VIS ID
TVIS44031177
Fusion event
HTLV-1-LOC105378305 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr10
Cytoband
q21.1
Reference genome
NCBI36/hg18
Start
54021083/52591317 (Hg38)
End
54021083/52591317 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA10G
Target gene
LOC105378305
Nearest miRNA
hsa-mir-1265/Upstream/1291662; hsa-mir-107/Downstream/2016557;
Nearest TSS
ENST00000439456/Upstream/30212; ENST00000422842/Downstream/164092;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/180099, chr10-CpG: 18/Downstream/280134
Upstream sequence
agctacctaggacttgacatgttcaaaatggtgactccatcttcccttccctttgccagtcacttgtaggaacagaccagatggtgccagccaaatagtc
Downstream sequence
catttgcataataagattaggatgggatgactagcctttcccttgtgctatgtaaacatcacacctggttgaaccaatctgtgagccctacataaatcag
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate