Basic Information
VIS ID
TVIS44031185
Fusion event
HTLV-1-C11orf42 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr11
Cytoband
p15.4
Reference genome
NCBI36/hg18
Start
6184440/6206634 (Hg38)
End
6184440/6206634 (Hg38)
Orient
+
Location type
Intronic
Target gene
C11orf42
Nearest miRNA
hsa-mir-210/Upstream/2350493; hsa-let-7a-2/Downstream/1028132;
Nearest TSS
ENST00000527297/Upstream/1068; ENST00000533426/Downstream/8721;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/1598334, chr11-CpG: 32/Downstream/27904
Upstream sequence
AGAAGTCAGCCTACCAGGCTTAAAAAAAAAAAAAATCTTAAAGCAGTGCCTACCACACTCAAAGAAGATTTAATGGCATGCTGCTTCCATTCCAAATAGG
Downstream sequence
GTAGCTGCTTACCACAAAGGCCAGCTTCCCAGGGAAGCAAAAACTGGAGAGCTCAAGGTCTTCCCAAGTATTAGAGCAACTGGTTTCAGCAGTGTAGAAG
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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