Basic Information
VIS ID
TVIS44031191
Fusion event
HTLV-1-ZBTB44 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr11
Cytoband
q24.3
Reference genome
NCBI36/hg18
Start
129645474/130270369 (Hg38)
End
129645474/130270369 (Hg38)
Orient
-
Location type
Intronic
Target gene
ZBTB44
miRNAs that regulate target gene
hsa-mir-652-3p ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-196a-3p ; hsa-mir-661 ; hsa-mir-1273f ; hsa-mir-4708-5p ; hsa-mir-6088 ; hsa-mir-4770 ; hsa-mir-143-3p ; hsa-mir-6860 ; hsa-mir-612 ; hsa-mir-5189-5p ; hsa-mir-3187-5p ; hsa-mir-1285-3p ; hsa-mir-766-3p ; hsa-mir-939-3p ; hsa-mir-6849-3p ; hsa-mir-759 ; hsa-mir-5586-3p ; hsa-mir-508-5p ; hsa-mir-4797-5p ; hsa-mir-3145-5p ; hsa-mir-374b-3p ; hsa-mir-5007-3p ; hsa-mir-4524b-5p ; hsa-mir-4524a-5p ; hsa-mir-1279 ; hsa-mir-922 ; hsa-mir-664a-3p ; hsa-mir-6074 ; hsa-mir-5692c ; hsa-mir-5692b ; hsa-mir-646 ; hsa-mir-503-5p ; hsa-mir-5692a ; hsa-mir-4644 ; hsa-mir-4306 ; hsa-mir-185-5p ; hsa-mir-7106-3p ; hsa-mir-873-5p ; hsa-mir-4784 ; hsa-mir-3150b-3p ; hsa-mir-4685-3p ; hsa-mir-4699-5p ; hsa-mir-4287 ; hsa-mir-501-5p ; hsa-mir-500b-5p ; hsa-mir-362-5p ; hsa-mir-5088-5p ; hsa-mir-6165 ; hsa-mir-4422 ; hsa-mir-6835-3p ; hsa-mir-1290 ; hsa-mir-3159
Nearest miRNA
hsa-let-7a-2/Upstream/1747920; hsa-mir-4697/Downstream/396366;
Nearest TSS
ENST00000527297/Upstream/8438; ENST00000602310/Downstream/44222;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/60623, chr11-CpG: 70/Downstream/43684
Upstream sequence
CAGCTTATATTCTAATTAAAACCCATGAAGGACAGAAAAGGTTAAGGAGAGgggcatataagtttaagatgcctgtaagaggaatatccaggtggaaatT
Downstream sequence
TATACATAAACTTGTCTGTATTGGCTTTTATCAactatgctccagatagaacactaggggctttagatatgctatctcacatgagtttacattataatac
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate