Basic Information
VIS ID
TVIS44031196
Fusion event
HTLV-1-LOC105376588 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr11
Cytoband
p14.3
Reference genome
NCBI36/hg18
Start
22476165/22498043 (Hg38)
End
22476165/22498043 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105376588
Nearest miRNA
hsa-mir-210/Upstream/2737960; hsa-let-7a-2/Downstream/921062;
Nearest TSS
ENST00000527297/Upstream/5931; ENST00000533092/Downstream/127599;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/65071, chr11-CpG: 61/Downstream/127117
Upstream sequence
TTCACCATCTAGTTTTCACATCATCTATTCATTTATTTACCAGATTTGTTATATGCTAAGGACTATGGTAGGTGCTAGAAATTTCAACATTAATGTGATA
Downstream sequence
CAAAGTCTCTCAAATAATTGTTAATCTAGTAGGAAAGGATGTGAATATCTAATTATGAAATAATATGGTTAGTGTAGTAACATTATAGTGGGAACTCTAT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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