Basic Information
VIS ID
TVIS44031227
Fusion event
HTLV-1-LOC112268087 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr12
Cytoband
q24.23
Reference genome
NCBI36/hg18
Start
118879290/119957103 (Hg38)
End
118879290/119957103 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA12E ; FRA12C
Target gene
LOC112268087
Nearest miRNA
hsa-let-7i/Upstream/243379; hsa-mir-3612/Downstream/198331;
Nearest TSS
ENST00000382841/Upstream/79812; ENST00000546861/Downstream/32766;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/79738, chr12-CpG: 189/Downstream/31640
Upstream sequence
agaaggggccactagccaagggatgggggcagcctttggaagctggaaaaggcaaggaaacggattctccactagagcctccaaaaagaaatacagccct
Downstream sequence
agtggcaccttgattttagtccagtgaaatccatgttgaacttctggactatagaactagaagaaaattaatgtgcattgttttaagccattaagttatg
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate