Basic Information
VIS ID
TVIS44031239
Fusion event
HTLV-1-FGF14 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr13
Cytoband
q33.1
Reference genome
NCBI36/hg18
Start
101523313/102072962 (Hg38)
End
101523313/102072962 (Hg38)
Orient
+
Location type
Intronic
Target gene
FGF14
miRNAs that regulate target gene
hsa-mir-574-5p ; hsa-mir-4455 ; hsa-mir-6867-5p ; hsa-mir-223-5p ; hsa-mir-511-3p ; hsa-mir-5010-3p ; hsa-mir-147a ; hsa-mir-6818-5p ; hsa-mir-8068
Nearest miRNA
hsa-mir-1297/Upstream/26958; hsa-mir-1267/Downstream/5458209;
Nearest TSS
ENST00000623511/Upstream/156317; ENST00000444686/Downstream/294577;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/155837, chr13-CpG: 60/Downstream/321368
Upstream sequence
atgtgtaaattgggcgaagaatggcaatagaaagtggtgatatttgtggcaaactgaagagttcatgccccacctaaaggCACTGAAATGCAAATGCTGA
Downstream sequence
AAATATATCTTACTTCTTACCGTATCTGTTGCCTCCACCTAgccagaggctggcagatcacttgaggttaacagttcaagaccagcctggccaacatggt
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate