Basic Information
VIS ID
TVIS44031244
Fusion event
HTLV-1-LINC00443 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr13
Cytoband
q33.3
Reference genome
NCBI36/hg18
Start
106104888/106654539 (Hg38)
End
106104888/106654539 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC00443
Nearest miRNA
hsa-mir-1297/Upstream/4608535; hsa-mir-1267/Downstream/876632;
Nearest TSS
ENST00000623511/Upstream/623; ENST00000622038/Downstream/119740;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/86223, chr13-CpG: 48/Downstream/263288
Upstream sequence
gggcttacacctcaGTGACCTAGTGGTGATTAGGACCCATGTATTCTGGGTCCAGGTCCAAGTGCATCTACACTATCCTGTATTTTCTAAAATTCAGACA
Downstream sequence
AAATGTTTTCTTTTGAACATGTCTTACATTCTCCATCTCGACAATGTTTGTTCAAGCCTATCTCTTTGCCTGGAATTCCCTCTTGATTCTCAACTCAGCT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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