Basic Information
VIS ID
TVIS44031245
Fusion event
HTLV-1-LOC105370283 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr13
Cytoband
q31.1
Reference genome
NCBI36/hg18
Start
81030792/81558656 (Hg38)
End
81030792/81558656 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105370283
Nearest miRNA
hsa-mir-1297/Upstream/3860540; hsa-mir-1267/Downstream/6060009;
Nearest TSS
ENST00000623511/Upstream/308218; ENST00000446314/Downstream/2323737;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/903346, chr13-CpG: 18/Downstream/2320873
Upstream sequence
aaaatgagctaggagtggtggtgcacacctgttgttccagctacttgggaggccgagaggtggtagtattacttgagcccgggatatcaaggctgcaata
Downstream sequence
agttgtaatagcatgactgcactccagcctgggcaacagggcaagaccctgtcttaaacacataacaaaacaaacaaataaaCAAAAGCAGGTGAATGCT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate