Basic Information
VIS ID
TVIS44031247
Fusion event
HTLV-1-UBAC2 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr13
Cytoband
q32.3
Reference genome
NCBI36/hg18
Start
98772124/99321869 (Hg38)
End
98772124/99321869 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA13D
Target gene
UBAC2
miRNAs that regulate target gene
hsa-mir-1-3p ; hsa-mir-484 ; hsa-mir-92a-3p
Nearest miRNA
hsa-mir-1297/Upstream/1113269; hsa-mir-1267/Downstream/34262;
Nearest TSS
ENST00000623511/Upstream/7161; ENST00000474510/Downstream/45918;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/120571, chr13-CpG: 20/Downstream/155164
Upstream sequence
CACAGAAAATAACTAAATCATTTTTCTGAGTTGAGGGAAGACAGTTTTTAGCTTACAGGAGCAATAGTAAGTTAGTTTGCCCAGGATGGCTGTCAGACCT
Downstream sequence
CAGTCCTATTTTGTTATCCAGTAGAGACTCCAGCTGCTGCCCAGGAAAGGTGAGGGGGATTCTCTTGTACTTAAAGATGACTGTAAGATTATTCACATGT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate