Basic Information
VIS ID
TVIS44031259
Fusion event
HTLV-1-UNC79 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr14
Cytoband
q32.12
Reference genome
NCBI36/hg18
Start
93237411/93701312 (Hg38)
End
93237411/93701312 (Hg38)
Orient
-
Location type
Intronic
Target gene
UNC79
miRNAs that regulate target gene
hsa-mir-124-3p
Nearest miRNA
hsa-mir-1260a/Upstream/16435022; hsa-mir-1185-1/Downstream/246914;
Nearest TSS
ENST00000550708/Upstream/12319; ENST00000554404/Downstream/86447;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/270192, chr14-CpG: 143/Downstream/86294
Upstream sequence
tcagtgatctctgtcctgcatttcttgatgctcaatacctgaaaaacattgttttttatagtttgtctggatttttagttgtcccaggcaggagggtaaa
Downstream sequence
tctggtctttgttactccatcttggctgaaagagaaagtttcatcaccaattttaaTTTTGAGGGCTGGAATAAGCAGGATTGAAATGAGTACAGTCCAA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate