Basic Information
VIS ID
TVIS44031274
Fusion event
HTLV-1-LINC02588 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr14
Cytoband
q12
Reference genome
NCBI36/hg18
Start
26139931/26600885 (Hg38)
End
26139931/26600885 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC02588
Nearest miRNA
hsa-mir-208a/Upstream/2457320; hsa-mir-1185-1/Downstream/307757;
Nearest TSS
ENST00000550708/Upstream/2473; ENST00000552826/Downstream/36356;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/395613, chr14-CpG: 203/Downstream/2164798
Upstream sequence
CCCTTCTCTGATTTCTTTCTTCAGACTTAATATTTAAATACTATTATACCTATCACTCCATGGGGCCCAGAAATGGTAGATATAATTTTTAATGTGGATG
Downstream sequence
GGATGCTGAATGGTAACTTAGGTATGATATGCCAGGAATCACAGAGACTATCCCAAGACCTAGTCAGACATCAAAGTATCAGTCAGCTACGAACTATTAA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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