Basic Information
VIS ID
TVIS44031280
Fusion event
HTLV-1-LOC102723493 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr15
Cytoband
q22.33
Reference genome
NCBI36/hg18
Start
65119156/67039764 (Hg38)
End
65119156/67039764 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA15A
Target gene
LOC102723493
Nearest miRNA
hsa-mir-10393/Upstream/542730; hsa-mir-11181/Downstream/1762086;
Nearest TSS
ENST00000557528/Upstream/38774; ENST00000559092/Downstream/19489;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/196622, chr15-CpG: 176/Downstream/25237
Upstream sequence
gcctaagccagctgtttggtgaccttaagcaaatcatcttctcctctctgggcctcagtttccccagccatataatgagggACATTTATGAATtattttg
Downstream sequence
gtttcagtttccccagaagcttgagtcaaggattcaagtgtgagtaataggtcatttagaaggtgatccctagaaactcaggtgaagggtgtggaagtga
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate