Basic Information
VIS ID
TVIS44031292
Fusion event
HTLV-1-CDIP1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr16
Cytoband
p13.3
Reference genome
NCBI36/hg18
Start
4501046/4511044 (Hg38)
End
4501046/4511044 (Hg38)
Orient
+
Location type
Intronic
Target gene
CDIP1
miRNAs that regulate target gene
hsa-mir-1301-3p ; hsa-mir-324-3p
Nearest miRNA
hsa-mir-1225/Upstream/1025575; hsa-mir-11401/Downstream/160274;
Nearest TSS
ENST00000527434/Upstream/2985; ENST00000444310/Downstream/3105;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/34118, chr16-CpG: 119/Downstream/26791
Upstream sequence
CTCCCCAGGGCTGGATGATGCTGTGCTCAAGCCTGCGGGTAGGAGGGCTCCAGCTTGCAGATCCCATGCGTGGATGCCATATATAGATGGTTGAAACCAG
Downstream sequence
CATCAGAGGAAGGAAGGTGACCTTACAGCCACTGCCGAGACCAACGTGTGCCCTGGCCCAGTCACAGCTGGAAATCCCAGGGCTGGTCTACACCCGACTC
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate