Basic Information
VIS ID
TVIS44031293
Fusion event
HTLV-1-LOC107984901 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr16
Cytoband
q12.1
Reference genome
NCBI36/hg18
Start
50896649/52305236 (Hg38)
End
50896649/52305236 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107984901
Nearest miRNA
hsa-mir-1225/Upstream/1562859; hsa-mir-11401/Downstream/3940284;
Nearest TSS
ENST00000527434/Upstream/33664; ENST00000564361/Downstream/140490;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/1148887, chr16-CpG: 125/Downstream/240488
Upstream sequence
CACATAAATATATACAACATAATAGGTATGCAAATATAATTAGACATGATGTAATTATAAATCATAATTCCAAGTTCTAAAAATATAAAATAGACAATAG
Downstream sequence
ATAACTTCATAAATACAAACATAAATGGGATAATACTGCCCATAATGTTTTAAGACATCCTTTTATTTGGCTATATATTCTGAATCTTTTCATGTCAGAA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate