Basic Information
VIS ID
TVIS44031313
Fusion event
HTLV-1-CXADRP3 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr18
Cytoband
p11.21
Reference genome
NCBI36/hg18
Start
14472081/14482082 (Hg38)
End
14472081/14482082 (Hg38)
Orient
+
Location type
Intronic
Target gene
CXADRP3
Nearest miRNA
hsa-mir-3976/Upstream/870882; hsa-mir-1-2/Downstream/348084;
Nearest TSS
ENST00000575820/Upstream/349592; ENST00000579292/Downstream/61064;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/7073, chr18-CpG: 51/Downstream/4717
Upstream sequence
gtaccctatatatatttatttatcaataaaatcaaCATTTTAAAAAGTGAGAAACACAGATGTGCTAGATCTTCATCTAAAGACATTTCTGAGAAAAATG
Downstream sequence
TATCTGTTTTCTTTCAAAAGAAATTTACACTTAATAGATATTATGGTAACTAAAGTAAGGCAGATAATTTTGGCCATCAGCTTATATTATGGGATAATCT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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