Basic Information
VIS ID
TVIS44031316
Fusion event
HTLV-1-LOC105372169 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr18
Cytoband
q22.1
Reference genome
NCBI36/hg18
Start
61318038/65499822 (Hg38)
End
61318038/65499822 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105372169
Nearest miRNA
hsa-mir-1-2/Upstream/7048664; hsa-mir-5011/Downstream/1581762;
Nearest TSS
ENST00000575820/Upstream/75809; ENST00000579862/Downstream/106268;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/1496801, chr18-CpG: 88/Downstream/250778
Upstream sequence
TCAGGATAAATAAGGCCTAATGTTAACACTGGAGTTTTTCATTCTCTCTGCAATCTTCATGGATGGAAATGATTTTGATAAGTTGTTGAGGCAGCAGTTT
Downstream sequence
CATGTCTATTCTGAGTGCAAAGAGACTGAAAGAAGACAAGATGAACTTTCAAGGAGAGATCAATATGGAAATTCCTTACTGAATGAATATAAATGAGTTA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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