Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene2898025528883430289532452889293128895949288807292888212328882901288840002889841428898563289208142892096328930492
Basic Information
VIS ID
TVIS44031324
Fusion event
HTLV-1-LOC107985335 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr19
Cytoband
q12
Reference genome
NCBI36/hg18
Start
34113239/28930492 (Hg38)
End
34113239/28930492 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107985335
Nearest miRNA
hsa-mir-10395/Upstream/8531138; hsa-let-7e/Downstream/6192208;
Nearest TSS
ENST00000633603/Upstream/37561; ENST00000589921/Downstream/19708;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/136389, chr19-CpG: 31/Downstream/162547
Upstream sequence
cccagcctcccaaagtgctgggattacaagtgtaagcaactgtgcctggcctcaatttaataaatcaatacagatatacattcatattatttcacacaat
Downstream sequence
ggaggtaaagaacaaaggaaataagacagaaactatctaaagaaattatctctgagacataagatgggggaagtgcattaaatttggctttcataataac
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate