Basic Information
VIS ID
TVIS44031339
Fusion event
HTLV-1-DSCAM integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr21
Cytoband
q22.2
Reference genome
NCBI36/hg18
Start
40475954/40182157 (Hg38)
End
40475954/40182157 (Hg38)
Orient
+
Location type
Intronic
Target gene
DSCAM
Nearest miRNA
hsa-let-7c/Upstream/735088; hsa-mir-3197/Downstream/30195;
Nearest TSS
ENST00000624081/Upstream/283681; ENST00000427451/Downstream/171497;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/37612, chr21-CpG: 22/Downstream/534
Upstream sequence
CCCAAATCCAGTGGATGCAAGAGCAACAAGGACTAATATAAGAGAGTGGACTTGGTATGAAGAAGTGCTGTTAGAGGCTAAAGACCAGAATGAGTGAAGG
Downstream sequence
TGACTGAAAGTTCTGGAGGTGAATTACATGAAAGGTTTAACAATGGAGAGGTAGCTGGGAGAGGGAGCGGGCCCTTCATGTTGGTGAATAGGAGGAGGTG
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate