Basic Information
VIS ID
TVIS44031344
Fusion event
HTLV-1-LOC112268283 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr21
Cytoband
q11.2
Reference genome
NCBI36/hg18
Start
14040781/13746589 (Hg38)
End
14040781/13746589 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC112268283
Nearest miRNA
hsa-mir-10396a/Upstream/22315; hsa-let-7c/Downstream/2792500;
Nearest TSS
ENST00000624081/Upstream/136412; ENST00000444356/Downstream/23343;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/22431, chr21-CpG: 74/Downstream/15642
Upstream sequence
GTCTAACTCTCAGCCAATCAGCAATAAAAGACCAAGGAAGCTATTAATTGCAAATTTCTATTTCAGGGGGCTAGAGGCTTTCCCAGAGTCCCATATGTGG
Downstream sequence
AGTCAGACTTAAACTCCAACCTaaagttatcttttcctcatttcaacactaaagttcatgcccaggggtggagatttaaaattctaatgctacatgcaat
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate