Basic Information
VIS ID
TVIS44031347
Fusion event
HTLV-1-ERVH48-1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr21
Cytoband
q22.3
Reference genome
NCBI36/hg18
Start
43218356/42925177 (Hg38)
End
43218356/42925177 (Hg38)
Orient
-
Location type
Intronic
Target gene
ERVH48-1
Nearest miRNA
hsa-let-7c/Upstream/1178336; hsa-mir-5692b/Downstream/25751;
Nearest TSS
ENST00000624081/Upstream/5834; ENST00000456957/Downstream/469;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/31427, chr21-CpG: 200/Downstream/48797
Upstream sequence
tgggattacaggggcctgccactgtgcccagctaatttttgtatttttagtagagacggagtttcaccatgttgaccaggctggtctcgaactcctgatc
Downstream sequence
tcgtgaatccaacggccttggcctcccaaagtgctgggattacgggcgtgaaccaccacgcccggccatgccatagccttcttggacccatgttggattt
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate