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TVIS44031351
Basic Information
VIS ID
TVIS44031351
Fusion event
HTLV-1-GPR173 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chrX
Cytoband
p11.22
Reference genome
NCBI36/hg18
Start
53119256/53073349 (Hg38)
End
53119256/53073349 (Hg38)
Orient
-
Location type
Intronic
Target gene
GPR173
miRNAs that regulate target gene
hsa-mir-574-5p
;
hsa-mir-675-3p
;
hsa-mir-6867-5p
;
hsa-mir-223-5p
;
hsa-mir-6767-3p
;
hsa-mir-586
;
hsa-mir-3202
;
hsa-mir-6763-5p
;
hsa-mir-3150a-3p
;
hsa-mir-491-5p
;
hsa-mir-6769b-5p
;
hsa-mir-6769a-5p
;
hsa-mir-92a-2-5p
;
hsa-mir-654-5p
;
hsa-mir-541-3p
;
hsa-mir-6825-5p
;
hsa-mir-939-5p
;
hsa-mir-1343-5p
;
hsa-mir-3175
;
hsa-mir-6883-5p
;
hsa-mir-6785-5p
;
hsa-mir-4728-5p
;
hsa-mir-6878-5p
;
hsa-mir-149-3p
;
hsa-mir-6797-5p
;
hsa-mir-1249-5p
;
hsa-mir-5703
;
hsa-mir-4516
;
hsa-mir-4434
;
hsa-mir-6133
;
hsa-mir-6130
;
hsa-mir-6129
;
hsa-mir-6127
;
hsa-mir-4510
;
hsa-mir-4419a
;
hsa-mir-873-3p
;
hsa-mir-1253
;
hsa-mir-4463
;
hsa-mir-6760-5p
;
hsa-mir-5197-3p
;
hsa-mir-8485
;
hsa-mir-4311
;
hsa-mir-4524a-3p
;
hsa-mir-4251
;
hsa-mir-4303
;
hsa-mir-4329
;
hsa-mir-5739
;
hsa-mir-6761-5p
Nearest miRNA
hsa-mir-1587/Upstream/736707; hsa-let-7f-2/Downstream/122062;
Nearest TSS
ENST00000429181/Upstream/24066;
ENST00000578306/Downstream/9018;
Nearest CpG islands
None/Target,
chrX-CpG: 62/Upstream/72435
,
chrX-CpG: 73/Downstream/8750
Upstream sequence
GGTGGCTGTGGCAGGCCAGGCTGGATTGAGCTGGAAAACCATGCAGAGGGGAGACTTTTCCTGGGAGGGAGGGAGTAGGAAGACATCCACTCAAGTTCCA
Downstream sequence
CCCCCTAATCCCAGCCCAGCCCCAACAATCATCCTGAGTTTCCCCAGTTTCTGCCCAATTGCCTCACTGCCTTCCCTCTGGGACCTGTGCTGTTACCTGG
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Sample Information
×
Sample name
Co9
Sample type
Nontumor
Age
61
Gender
Male
CpG Island Information
×
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