Basic Information
VIS ID
TVIS44031354
Fusion event
HTLV-1-TMSB15B-AS1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chrX
Cytoband
q22.2
Reference genome
NCBI36/hg18
Start
103030992/103889415 (Hg38)
End
103030992/103889415 (Hg38)
Orient
-
Location type
Intronic
Target gene
TMSB15B-AS1
Nearest miRNA
hsa-let-7f-2/Upstream/8826189; hsa-mir-105-1/Downstream/2750399;
Nearest TSS
ENST00000429181/Upstream/57187; ENST00000455723/Downstream/29481;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/201857, chrX-CpG: 66/Downstream/29144
Upstream sequence
AGAAAATATCTTTAGTGGAGTACCTAGACTGGTCAAAACCCAGTGATTAGGATAATACGTGCATTCCAATGGATGCTGGTAATATTTTGCGGTTGGAGGT
Downstream sequence
GGGGGAGCAGTGCAGGAGAATCATTCATCATACAAACAGAGCCAATAAAAACATTATTCAAATATTTACAAATGTTTCACTTGTACTGCAACATGCTGCC
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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